PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G31100.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 280aa    MW: 32567.4 Da    PI: 7.9668
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G31100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix772.9e-2427109186
      trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +W  qe+++Li+ar e+e++  + ++++k+ We+vs+++rerg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  OB04G31100.1  27 QWGAQETRELIAARGEIEREAVAaRRSAKTMWEAVSARLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 109
                   7****************98877526899************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.29E-162692No hitNo description
PfamPF138376.8E-2227110No hitNo description
PROSITE profilePS500907.342885IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMEGGCGEGV GGGGGGGGGG RDERVPQWGA QETRELIAAR GEIEREAVAA RRSAKTMWEA  60
VSARLRERGY RRTADQCKCK WKNLVNRYKG KETSDPENGR QCPFFDELHA VFTERARTMQ  120
QQLLESESGP SVKKKLKRPS GNLSSEDSDD EEDAGEESGD EKPLRGRKRK TTDKRQQSQR  180
RAEKSRTSIS SIHELLQDFL AQQQRMDIQW HEMMEKRSRE RLVFEQEWRQ SLQKLEQERL  240
MLEHTWMERE EQRRMREEDR AEKRDALLTT LLNKLLQEDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G31100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1057200.0AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence.
GenBankAL6066380.0AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552280.0CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653736.21e-153PREDICTED: uncharacterized protein LOC102706654
TrEMBLJ3M1350.0J3M135_ORYBR; Uncharacterized protein
STRINGOB04G31100.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-30Trihelix family protein