PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G31020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 353aa MW: 37768.9 Da PI: 7.9118 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 7e-25 | 76 | 120 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ OB04G31020.1 76 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 120 79****************************************996 PP | |||||||
2 | QLQ | 59.2 | 1.2e-20 | 15 | 50 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++ OB04G31020.1 15 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 50 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.4E-11 | 14 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.187 | 15 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.5E-14 | 15 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.517 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.5E-21 | 77 | 119 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MMARWAAVTA AXPPPFTAAQ YEELEQQALI YKYLVAGVPV PADLLLPIRR GLDSLASRFY 60 HHPILGYGSY FGKKLDPEPG RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVEA 120 QLAAPHSQAP ATAPAAVTTT AFQNHSLYPA IANGGGGGGG ALMAAGGGGG GCGGSAPGSF 180 ALGSNTQLHM DNAASYSTAA GAGNKDFRYS AYGVRPLADE HNPLITGAMD TSIDSSWRLL 240 PPQTSAFSVS SYPMLGNLSD LDQNTICSLP KAEREPLSFF GSDYVTVDSG KQENQTLRPF 300 FDEWPKARDS WPELADDNSL ASFSATQLSI SIPMATSDFS TTSSRSPNGI YSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G31020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241439 | 0.0 | AK241439.1 Oryza sativa Japonica Group cDNA, clone: J065162G19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652759.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 3-like | ||||
Swissprot | Q6AWY6 | 0.0 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | J3M127 | 0.0 | J3M127_ORYBR; Uncharacterized protein | ||||
STRING | OB04G31020.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-45 | growth-regulating factor 5 |