PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G29090.1 | ||||||||
Common Name | LOC102703483 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 812aa MW: 87217 Da PI: 6.0779 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67 | 2.4e-21 | 110 | 165 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r+eL+k+l+L+ rqVk+WFqNrR+++k OB04G29090.1 110 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLRLEPRQVKFWFQNRRTQMK 165 678899***********************************************998 PP | |||||||
2 | START | 164.8 | 6.2e-52 | 323 | 556 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla....kae 80 la +a++elvk+a+ +ep+W + + es+n +e+l +f++ + + +ea+r+sg+v+ +++a lve+l+d + +W+ ++ ka+ OB04G29090.1 323 LAMSAMDELVKMAQMGEPLWITGAfgaaspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIiDDSAALVETLMDER-RWSDMFScmiaKAS 418 67899******************99*********************9999**************997256779*********.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvt 165 t+e is+g gal lm+aelq+lsplvp R++ f+R+++ql++g w++vdvS d + + + +++lpSg+++++++ng kvt OB04G29090.1 419 TIEEISTGvagtrnGALLLMQAELQVLSPLVPiREVKFLRFSKQLSEGAWAVVDVSADGFMRDQGitsasTTANMNCRRLPSGCVMQDTPNGFVKVT 515 ********************************************************995333333333556667899******************** PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 wveh++++++++h+l+r+l++sgla ga +w atlqrqce+ OB04G29090.1 516 WVEHTEYDEASVHQLYRPLLRSGLALGAGRWIATLQRQCEC 556 ***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-24 | 91 | 168 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.93E-21 | 99 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.22 | 107 | 167 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 108 | 171 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.28E-20 | 109 | 165 | No hit | No description |
Pfam | PF00046 | 8.1E-19 | 110 | 165 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 142 | 165 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.658 | 313 | 559 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-25 | 316 | 556 | No hit | No description |
CDD | cd08875 | 2.05E-106 | 317 | 555 | No hit | No description |
SMART | SM00234 | 4.3E-42 | 322 | 556 | IPR002913 | START domain |
Pfam | PF01852 | 1.0E-43 | 323 | 556 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-16 | 576 | 778 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
MSFGGGHFGD GVVAGGMQFP YSGAGPGVFT SSPALSLALV DAAGRGGSGG KMVTVIHGAK 60 ARDASEVENE MSRSGSDHLD VVSCGDVGGG GGGDEDEDED AEPGNPRKRK KRYHRHTPQQ 120 IQELEAMFKE CPHPDEKQRA ELSKRLRLEP RQVKFWFQNR RTQMKMQLER HENALLKQEN 180 DKLRTENLSI REAMANPVCG GCGGPAMLGE VSLEEHHLRV ENARLKDELS RVCALAAKFL 240 GKPISLMAPP KMHHQPHPMS GSSLELAVGG IGPMPSATMP VSTITDFAGA MSSSMGTVIT 300 PMKSAEAEPS AMAGIDKSLF LELAMSAMDE LVKMAQMGEP LWITGAFGAA SPAKESLNFE 360 EYLNTFPPCI GVKPEGYVSE ASRESGIVII DDSAALVETL MDERRWSDMF SCMIAKASTI 420 EEISTGVAGT RNGALLLMQA ELQVLSPLVP IREVKFLRFS KQLSEGAWAV VDVSADGFMR 480 DQGITSASTT ANMNCRRLPS GCVMQDTPNG FVKVTWVEHT EYDEASVHQL YRPLLRSGLA 540 LGAGRWIATL QRQCECLAIL MSSIALPEHD SIAIHPEGKR SMLKLARRMT KNFCAGVSTS 600 SAREWSKLDG LTGNIGEDVH VMAHKSVDEP GMPPGVVLSA ATSVWMPVMP HRLFNFLRNE 660 GLRAEWDILS NGGPMQEVTS IAKGQQDGNS VCLLKASPTN ANQNSMLILQ ETCADASGLM 720 VVYAPVDIPA MHLVMSGGDS TCVALLPSGF AILPAGPNTG ADHKMGSLLT VAFQILVNSQ 780 PTAKLTVESV ETVSNLISCT IKKIKTALRC DV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | PRKRKKR |
2 | 106 | 110 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G29090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111914 | 0.0 | AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652658.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC4 | ||||
Swissprot | Q7Y0V9 | 0.0 | ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4 | ||||
TrEMBL | J3M0I4 | 0.0 | J3M0I4_ORYBR; Uncharacterized protein | ||||
STRING | OB04G29090.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102703483 |
Publications ? help Back to Top | |||
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