PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G29050.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 472aa    MW: 52290.7 Da    PI: 5.7233
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G29050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-351302212102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y ++ed++++++isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         weF+++ Fk+g+k+ll  i+
  OB04G29050.1 130 FLTKTYAMVEDPSTDDTISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WEFANDCFKRGEKHLLGGIQ 217
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  OB04G29050.1 218 RRKG 221
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.2E-57126219IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.0E-38126219IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.18E-34126219IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-19130153IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-31130219IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-19168180IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340169193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-19181193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MADNDEEAAA ATTESSRAKL PMGSLYEGAM FVLFEMVVLE LALVLGQSPA QMRARHTNLE  60
KGREPSRTRW MLLGLSLTNP HPQIPFLDAL SILWKQLRSL DLHLRLPPSQ GALFPARFPM  120
ASPAAGTPPF LTKTYAMVED PSTDDTISWN DSGTAFVVWR PAEFARDLLP KHFKHSNFSS  180
FVRQLNTYGF KKVVADRWEF ANDCFKRGEK HLLGGIQRRK GSGTGAVTPA GGIPTAIPIS  240
SPPTSSGGEP AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXARARRLC DGVRRLVSRY  360
DHGGGEEEKE GDEGSVGKPM LFGVAIGAKR PREENGEDEE DDGGADEEDG EDEDEEDDDE  420
RHAARRGGPV REGKARRTEL SDLDVLALSV RAAAAARSGS GRGSRDRKSS VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2612022211123Heat shock factor protein 1
5d5u_B7e-2611921918129Heat shock factor protein 1
5d5v_B7e-2611921918129Heat shock factor protein 1
5d5v_D7e-2611921918129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G29050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444831e-172AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691545.11e-128PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ7XRX33e-77HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLJ3M0I01e-171J3M0I0_ORYBR; Uncharacterized protein
STRINGOB04G29050.11e-172(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.18e-49HSF family protein
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]