PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28860.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 297aa    MW: 32260.2 Da    PI: 6.1628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000761952261854
                   HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +++  L++++ +      +K + a++L ++++YIk L
  OB04G28860.1 195 EKITALQQIVSPF-----GKTDTASVLLETINYIKFL 226
                   6778888888887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.055177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-8192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-6192233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00125195231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAPEVFEGVP VACDYLKGMD MDDAGDMGAA SAVAAAGAHS LDSNGPHAAI RSIERGIASS  60
PLVYQQLGND GAVVQVQRCI QPQDQAGASM AAFLQQLIPT SVPDDDHQPG IEIGSVSPDV  120
VCFSGYRSRT PEELMCRDTK EQQITQLART CSSRGSDPNK KRSAGRVGGN GKKSKSETSL  180
TSSPKPQAPK VNLGEKITAL QQIVSPFGKT DTASVLLETI NYIKFLHGQI QLFSEPYLTT  240
NSTNKDHSEE KRKAGLEHDL RSRGFCLAPV SWTPELLYHD DVLPECWTPA YRNYFYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636877.11e-129uncharacterized protein LOC4336685 isoform X3
TrEMBLJ3M0G10.0J3M0G1_ORYBR; Uncharacterized protein
STRINGOB04G28860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1425244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.12e-29bHLH family protein