PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28380.1
Common NameLOC102706748
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 577aa    MW: 63176.5 Da    PI: 4.6637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13395442355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   ++h + ErrRR+++N+ f  L++l+P+      +K++Ka+iL +++ Y+k+L+
  OB04G28380.1 395 KNHVMSERRRREKLNEMFLILKSLVPSV-----RKVDKASILAETIAYLKELE 442
                   5899***********************7.....6****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-5520204IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.577392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-17395459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-15395446No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16396459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-11396442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MASAPPVQEQ HLQPGTKHFR NQLAAAVRSI GWSYAIFWSI STSRPDQVVL AWKDGFYNGE  60
VKTRKISNSE ELTAEQVILQ RSEQLRELYC SLLSGECDHR ARRPMAALSP EDLGDAEWYY  120
VICMTYIFRP GQGLPGKSFA SNAPVWLYNA QSADTNTFLR ALLAKSASIQ TIVCIPFMSG  180
VLELGTTDLV SEDPNLVNQI VASFQEPPFP TFLEVPTTVP PPDEMEDADG VFEGFIDHDA  240
IEQEQTVVVV PQGEHEIAAN DDLDQVTMET DELYSLYEEL DLDVVRFLED TAGLPVDPGR  300
SFQLVPTSSS LEAAAAANDD GDAVDDGVVN SRASCFVAWK RASCSDEAMA AVPVTGIEPQ  360
KLLKKAVDGG AWMGSNDGDG RDGRGAIMAQ ESSIKNHVMS ERRRREKLNE MFLILKSLVP  420
SVRKVDKASI LAETIAYLKE LEKRVKELES SREASTRQQR RRREIAGGKA CVVGGGDTGR  480
KQHRVVTSQQ EGAPTANVDV TVAGKVVVLD VQCRWKELVM TRVFDAIKSL SLDILSVQAS  540
APDGLLRLKI QAKFACSGTV APGMISEELQ KAIGSYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2152052193Transcription factor MYC3
4rqw_B1e-2152052193Transcription factor MYC3
4rru_A3e-211920048227Transcription factor MYC3
4rs9_A1e-2152052193Transcription factor MYC3
4ywc_A3e-211920048227Transcription factor MYC3
4ywc_B3e-211920048227Transcription factor MYC3
4yz6_A1e-2152052193Transcription factor MYC3
5t0f_A1e-2152002188Transcription factor MYC3
5t0q_A1e-2152002188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400405ERRRRE
2401406RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653664.10.0PREDICTED: anthocyanin regulatory R-S protein-like isoform X2
SwissprotP130271e-175ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLJ3M0B30.0J3M0B3_ORYBR; Uncharacterized protein
STRINGOB04G28380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.36e-63bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]