PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G27960.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 263aa MW: 27664.1 Da PI: 9.7928

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G27960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.8	2.3e-41	104	180	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l+ +keyhrrhkvCevh+kap v+v+g+eqrfCqqCsrfh l efD++k+sCrrrLa+hnerrr+++ OB04G27960.1 104 RCQVEGCDVTLTGVKEYHRRHKVCEVHAKAPRVVVHGIEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRRRSN 180 6*************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-34	101	166	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	33.026	102	179	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.24E-40	103	182	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-32	105	178	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEGNGCGGGG SGQTPRGVAG MHWAPVTSAP CPQPFLPPPP CRPDQMQQQG LTCLKLGKRP 60 CFWGGSGTSH AAQGSSAGGG GGGGGGAEGK RKEKAATAAP VVPRCQVEGC DVTLTGVKEY 120 HRRHKVCEVH AKAPRVVVHG IEQRFCQQCS RFHVLAEFDD AKKSCRRRLA GHNERRRRSN 180 ASEAMARGSA HPHGMPMLGH GSPPYGLPTS SAGALSLLSA TRATGPWLIP TPDISARSSA 240 ALDELIAENR AALLSWQFFS DRX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-32	105	178	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G27960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068749	0.0	AK068749.1 Oryza sativa Japonica Group cDNA clone:J013158C23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653653.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	1e-145	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	1e-145	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	J3M071	0.0	J3M071_ORYBR; Uncharacterized protein
STRING	OB04G27960.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10303	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	4e-37	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]