PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G27770.1 | ||||||||
Common Name | LOC102710866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 26490.1 Da PI: 8.7126 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 79 | 133 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k OB04G27770.1 79 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTK 133 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.6e-41 | 79 | 168 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l OB04G27770.1 79 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 168 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.94E-19 | 72 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 75 | 135 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-18 | 77 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-19 | 79 | 133 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.8E-17 | 79 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.04E-16 | 79 | 136 | No hit | No description |
PRINTS | PR00031 | 4.2E-6 | 106 | 115 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 110 | 133 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.2E-6 | 115 | 131 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.2E-11 | 135 | 169 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.7E-24 | 135 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0010016 | Biological Process | shoot system morphogenesis | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MMERAEDLRL SLSLSSPLAP RTHHVAAMLF HSPPEKRFLE MPLLPAAKRS EVAAADEERA 60 GLRGGSDEED GGCGIDGSRK KLRLSKDQSA VLEDSFREHP TLNPRQKAAL AQQLGLRPRQ 120 VEVWFQNRRA RTKLKQTEVD CEFLKRCCET LTEENRRLQK EVQELRALKL VSPHLYMNMS 180 PPTTLTMCPS CERVSNANNS SSAAPDRRGA GGVTAAGGND TAADGGILCH RPIAVRPQQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 83 | SRKKLRL |
2 | 127 | 135 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G27770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122006 | 0.0 | AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652606.1 | 1e-177 | PREDICTED: homeobox-leucine zipper protein HOX17 | ||||
Swissprot | Q0JB92 | 1e-133 | HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17 | ||||
TrEMBL | J3M052 | 1e-175 | J3M052_ORYBR; Uncharacterized protein | ||||
STRING | OB04G27770.1 | 1e-176 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 9e-73 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 102710866 |
Publications ? help Back to Top | |||
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