PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27270.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 704aa    MW: 78028.7 Da    PI: 7.7166
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.31.6e-3170154187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  OB04G27270.1  70 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSELEA 154
                   8*********************************************************************866665..******985 PP
2trihelix106.51.9e-33456541187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+k ev+aLi++r e++ r++++  k+plWee+s  mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a
  OB04G27270.1 456 RWPKTEVHALIQLRMELDMRYQETGPKGPLWEEISGGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-ADDSKTCPYFHQLDA 541
                   8*********************************************************************8.88999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.61963127IPR017877Myb-like domain
SMARTSM007175.2E-467129IPR001005SANT/Myb domain
CDDcd122032.62E-2969134No hitNo description
PfamPF138372.5E-2269155No hitNo description
PROSITE profilePS500907.457449513IPR017877Myb-like domain
SMARTSM007170.0024453515IPR001005SANT/Myb domain
PfamPF138371.5E-22455542No hitNo description
CDDcd122032.33E-28456520No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MPRRYPCRGA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXNR WPREETLALI RIRSEMDATF RDATLKGPLW EEVSRKLAEL GYKRSAKKCK  120
EKFENVHKYY KRTKEGRAGR QDGKSYRFFS ELEALHATAP QTPQPQQQLP PVSSGTHAMH  180
AFAPTVSAPP PMSSMPPPPG PIQPAPISSA APAVSLELPP QPLINLQGFS FSSMSGSESD  240
DESEDDEMTA ETGGSQDHLG KRKRGAGGKK LTTFFEGLIK QVVDRQEEMQ RRFLETMEKR  300
EAERTAREEA WRRQEVARLN REQEQLAQER AAAASRDAAV ISFLQRIGGQ SAQVPPVGTV  360
VQMPTPVQLQ TPPLSKQPAA RQHQPQTNPP PPAPIPAAPL QQQPPQPQHK ETTHHEAVTP  420
RSAPPTSGSS LEVVPAAEQL AESGLGGEGG SASSSRWPKT EVHALIQLRM ELDMRYQETG  480
PKGPLWEEIS GGMRRLGYNR SSKRCKEKWE NINKYFKKVK ESNKKRADDS KTCPYFHQLD  540
AIYRRKHLTG GGGGASSANV AGSVAATTLD QQNPNRHEIE GKNINDSDKR NNGGAQVPTS  600
NGDTAPTTAT FDVDRGMKKP EDIVRELSEQ PPREFTTDET DSDDMGDDYT DDGEEGEDDG  660
KMQYRIQFQR PNTAGANTAP PPATTPASAV PTSTPTSTFL AMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX682610.0X68261.1 O.sativa gt-2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692334.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X2
TrEMBLJ3M0020.0J3M002_ORYBR; Uncharacterized protein
STRINGOB04G27270.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-46Trihelix family protein