PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G25790.1

Common Name

LOC102706649

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 278aa MW: 30896.5 Da PI: 6.8826

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G25790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.3	4.5e-51	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrF P+deelv++yL+kkv++++ + ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s + OB04G25790.1 10 LPPGFRFYPSDEELVCHYLHKKVTNERASQ-GTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPaT 105 79***********************888.88***********77777889**********************************977 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg++ktLvfy+grap+g+k+ Wvmhe+rl OB04G25790.1 106 RAVVGMRKTLVFYQGRAPNGVKSGWVMHEFRL 137 788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-61	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.756	10	156	IPR003441	NAC domain
Pfam	PF02365	3.3E-28	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGLREIESTL PPGFRFYPSD EELVCHYLHK KVTNERASQG TLVEVDLHAR EPWELPDVAK 60 LTASEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RSPATRAVVG MRKTLVFYQG 120 RAPNGVKSGW VMHEFRLDSP HSPPKEDWVL CRVFQKSKGD GEQENATSAA SPATFAGSSR 180 VAAAPDVRAA YSDQTGSSTG FAPRQSEILD SSNHQLLNLA MFQCNSVLDH FPQEVSSSPM 240 MGLGSIGIGD DQYGFFYDVG FEETANLGAG MRFPQGWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	1	156	4	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-50	1	156	4	165	NAC domain-containing protein 19
4dul_B	2e-50	1	156	4	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G25790.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK062955	0.0	AK062955.1 Oryza sativa Japonica Group cDNA clone:001-109-C12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652516.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
Swissprot	Q9FLJ2	2e-63	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	J3LZK4	0.0	J3LZK4_ORYBR; Uncharacterized protein
STRING	OB04G25790.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-82	NAC domain containing protein 74

Link Out ? help Back to Top
Entrez Gene	102706649

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]