PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G23030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 419aa    MW: 43793.5 Da    PI: 8.1829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G23030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00165778223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +Cp Cgk F +   +  H+r+H
  OB04G23030.1 57 TCPECGKAFLSDKAMYGHLRSH 78
                  8*********999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.4895683IPR007087Zinc finger, C2H2
SMARTSM003550.0275678IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.2E-85778No hitNo description
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
PfamPF139126.5E-45880IPR007087Zinc finger, C2H2
SuperFamilySSF576675.2E-8225252No hitNo description
PfamPF139124.8E-8230254IPR007087Zinc finger, C2H2
SMARTSM003550.22230252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515230257IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
PfamPF139125.9E-7308331IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93309336IPR007087Zinc finger, C2H2
SMARTSM003553.7309331IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTAAAAAKVD ATDDEEPPAP AELAPKAASQ KKVVEVQGAG LGDGAVDAAP PVREDLTCPE  60
CGKAFLSDKA MYGHLRSHPQ RRSRYKGAAA AADEGFMGGV TRTRKVAQKE AALGDHHHPG  120
RSPGFVVQEE PEKAALKEHV AAVTAEPHMP EPRTPVKLGP IAEAPILGDK NRPADTPLSS  180
SRRTKYPVKP GSHGVEQQSP PAPAPPAADV GPPPPPVVRR IPSPASDKKF GCPVCPRTFS  240
SYQALGGHTT MHKRELRRSA QQRQHDAHSI LAQQLHGVVD APVVAASGRG PVEEGLVSPP  300
AAAPPKETFQ CAKCYMIFPT GQALGGHKRK HFLEKEQLRP SITPSPQTTA TTEPAPLVAH  360
ANPASPIASA ASPAPMAKPV PSGGSTPETP IGAAAAEQPG INIFDLNELP KDHEGENQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G23030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653512.10.0PREDICTED: zinc finger protein 628-like
TrEMBLJ3LYS80.0J3LYS8_ORYBR; Uncharacterized protein
STRINGOB04G23030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1819399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.16e-14C2H2 family protein