 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB04G20220.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 412aa MW: 44939.4 Da PI: 6.442 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB04G20220.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 139 | 5.1e-43 | 60 | 283 | 92 | 296 |
GRAS 92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg..............ppslRiTgvgspesgskeeleetgerLakfAeel 172
+f+h+taNqaI+ea+e+ +r+H++Dfd+s+G+QWp+L+q++++ ++ p slRiTg+gs s++el+et+ rL++fA+++
OB04G20220.1 60 EFAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSMSDAASTttssshdddgrcdgPVSLRITGFGS----SADELRETEARLTRFAASC 152
69*************9876699*********************9877333445566677777689*********....9***************998 PP
GRAS 173 .gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe........adh.nsesFlerfle 259
++++ef+ + + ++l e++r++ + +++Vnlv+ + + s e + + + + slsP +v ++e+ d +s+s l f+
OB04G20220.1 153 pNLRLEFEGI-LNGSNSL-HERIRLDDDATVVVNLVFPAAQNA-TNSSREACVATAMAHIHSLSPSMVFLIEKHdgggdptgGDNaSSASVLPWFAA 246
79*******5.6666666.89****************888876.6666677899******************98555555543333666******** PP
GRAS 260 aleyysalfdsleaklpreseerikvErellgreivn 296
l+y++a+fdsl++ lp++s er +Er lgrei +
OB04G20220.1 247 NLRYFAAVFDSLHECLPADSAERLAIERNHLGREIGD 283
***********************************77 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MNLTLSLGID GGAGAVAAKK KRKVVGDGGV MHGGDGVERG VRFVTRTRVP QARDRMVKKE 60
FAHFTANQAI VEAFESGGRR RLHVVDFDVS YGFQWPSLIQ SMSDAASTTT SSSHDDDGRC 120
DGPVSLRITG FGSSADELRE TEARLTRFAA SCPNLRLEFE GILNGSNSLH ERIRLDDDAT 180
VVVNLVFPAA QNATNSSREA CVATAMAHIH SLSPSMVFLI EKHDGGGDPT GGDNASSASV 240
LPWFAANLRY FAAVFDSLHE CLPADSAERL AIERNHLGRE IGDAFDILDS VKQTDLAVTL 300
NALVVERQHW QCKEVTLIAK EQTLPKFQRQ KTLNSLQPEE PPSPVIDRQL WRLGEREIFA 360
EYLSVEFSTR QRLLGGRRSE EELCSGNPDR KNGASWAAGG GISGASNVCR FR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL606458 | 1e-106 | AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence. |
| GenBank | AP014960 | 1e-106 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CR855101 | 1e-106 | CR855101.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0308C03, complete sequence. |
