PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G19940.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 410aa    MW: 45137.5 Da    PI: 10.4705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G19940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.3e-11117160855
                   HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    Er RR+++++ f++L  llPk +     +K +Ka+i+ +A+ YI+ L+
  OB04G19940.1 117 TERERRKKMKNMFSTLHALLPKiP-----GKADKATIVGEAIGYIRTLE 160
                   7*********************88.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.478109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13113170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-10114163No hitNo description
Gene3DG3DSA:4.10.280.103.6E-13114169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-9117160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-6117165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSREEGANLL PREADESPGH ADAFTAGVSP VRSIKTEKSN SSSSSGDPGE INSGLEVASP  60
PVIGVSTRIK GAGKNSAAVK REEGGGCAGV RNGVGRRGSN GKGKSALDME HALHIWTERE  120
RRKKMKNMFS TLHALLPKIP GKADKATIVG EAIGYIRTLE DVVLKLEGLK MERMRAQHWA  180
SSAAAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXGPG AGAADVVGAE HHADHGRRGR VHQHVPPAAE  360
GVLHHGGVRA GEAPDRRGDV HHVRRPGQEL VQRPCPSERS LSSKPRGSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G19940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087287e-97AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LXW91e-112J3LXW9_ORYBR; Uncharacterized protein
STRINGOB04G19940.11e-113(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-22bHLH family protein