 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB03G46020.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 134aa MW: 14163.5 Da PI: 10.0639 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB03G46020.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.7 | 8.6e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg+ F L H+r+H
OB03G46020.1 94 HECHICGQGFEMGQALGGHMRRH 116
79********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 134 aa
Download sequence Send
to blast |
MTKHPRDGGV SLSLSLSLGA AAAAAAEAAK KXXXXXXXXX XXXXXXRAFP SFQALGGHRT 60
SHLRGRHGLA LCLAAATVKE APKKAEEKPA AATHECHICG QGFEMGQALG GHMRRHRDEA 120
AAVQAPPVLL ELFV
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC104433 | 6e-98 | AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence. |
| GenBank | AK119690 | 6e-98 | AK119690.1 Oryza sativa Japonica Group cDNA clone:002-157-B05, full insert sequence. |
| GenBank | AP014959 | 6e-98 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | AY286473 | 6e-98 | AY286473.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP15 mRNA, complete cds. |
| GenBank | AY305864 | 6e-98 | AY305864.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP37 (ZFP37) mRNA, complete cds. |
| GenBank | CP012611 | 6e-98 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
| GenBank | CT833140 | 6e-98 | CT833140.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212G11, full insert sequence. |
| GenBank | EU280899 | 6e-98 | EU280899.1 Oryza sativa Indica Group zinc finger protein (MM874) gene, complete cds; mitochondrial. |
| GenBank | EU280900 | 6e-98 | EU280900.1 Oryza sativa Japonica Group zinc finger protein (MM874-2) gene, complete cds. |
| GenBank | HQ858846 | 6e-98 | HQ858846.1 Oryza sativa Japonica Group isolate UT1603 C2H2 transcription factor mRNA, partial cds. |
