PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G44400.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 381aa    MW: 40404.8 Da    PI: 9.9529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G44400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.2e-30309367259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ve++++dp+++++tYe+eHnh 
  OB03G44400.1 309 SDNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVEKCRSDPTMLVVTYENEHNHA 367
                   69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32300369IPR003657WRKY domain
PROSITE profilePS5081130.825303369IPR003657WRKY domain
SuperFamilySSF1182901.7E-26306369IPR003657WRKY domain
SMARTSM007742.6E-36308368IPR003657WRKY domain
PfamPF031067.5E-26310366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDGVEEANVA AVESSKKLVA ILSRSGDPFR LMAAVAETDE AVSRFDRVVT ILSNRVGHAR  60
ARVGKMRRSS PPSVDPSCLM DHPLTAATTT TSPVAPSNGR LRVSITPPAP PSPATAARPN  120
MEEKDVVVVA AAAAAVAPSA AKITPAVVDR SLFLETPLLD LNSCGGAPAA SMASAKNSSK  180
LGAAPMVNSS SSANHIQFQP PMKQQQQQQQ KSFQFEQKPS EKFHIEMPRS VGGGGGGGKE  240
VISFSFDNSV CTSSAATSFF TSISSQLISM SDAGTNSAAA APTKKPSKPR EKKVVTVPAI  300
SDKVADIPSD NYSWRKYGQK PIKGSPHPRG YYRCSSKKDC PARKHVEKCR SDPTMLVVTY  360
ENEHNHAQPL DLSLVQTNPQ P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-193063691274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G44400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8352021e-98CT835202.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651909.10.0PREDICTED: protein WRKY1-like
TrEMBLJ3LTR40.0J3LTR4_ORYBR; Uncharacterized protein
STRINGOB03G44400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-37WRKY DNA-binding protein 21