PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G42670.1
Common NameLOC102703767
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 341aa    MW: 36592.1 Da    PI: 8.2333
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G42670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.5e-102612952155
                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   k +yps++e++ LA+++gL+++q+ +WF N+R ++
  OB03G42670.1 261 KWPYPSETEKATLAQSTGLDQKQINNWFINQRKRH 295
                   669*****************************885 PP
2ELK33.87.5e-12215236122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK+qLlrKY+g+Lg+L+q Fs
  OB03G42670.1 215 ELKRQLLRKYGGSLGDLRQGFS 236
                   9******************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.9E-1690135IPR005540KNOX1
PfamPF037902.8E-1991129IPR005540KNOX1
SMARTSM012565.8E-27137188IPR005541KNOX2
PfamPF037916.8E-22143186IPR005541KNOX2
PfamPF037892.5E-8215236IPR005539ELK domain
PROSITE profilePS512139.969215235IPR005539ELK domain
SMARTSM011885.3E-6215236IPR005539ELK domain
PROSITE profilePS5007112.584235298IPR001356Homeobox domain
SuperFamilySSF466893.64E-18237301IPR009057Homeodomain-like
SMARTSM003891.6E-11237302IPR001356Homeobox domain
CDDcd000866.90E-14238297No hitNo description
Gene3DG3DSA:1.10.10.605.3E-27240299IPR009057Homeodomain-like
PfamPF059203.7E-17255294IPR008422Homeobox KN domain
PROSITE patternPS000270273296IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MENFVSLAAA AGGGGGCTAN GAKSCSLLEL PLTTASSAPD NKAHHSSPPA YYQLLAAGSA  60
SSAQHGRHHH HHHTGGGGAA AAPGQISPAA AVKADIMSHP QYSSLLAAYL GCKKVGAPPD  120
VLAKLSTVPA AKLDAAGGHP RRDDPELDQF MDAYCSMLMR YREELERPIQ EAAEFFRSVQ  180
SQLDSIADSN GDGPGSSEEE QDTSCPEEAD PSDRELKRQL LRKYGGSLGD LRQGFSKRTK  240
KGKLPREARQ KLLHWWELHY KWPYPSETEK ATLAQSTGLD QKQINNWFIN QRKRHWKPTP  300
AAGAAAFPAM EAARPGGGVA AALPLYMGRP FVLDGMYRLG S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G42670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288841e-110AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
GenBankAK1072961e-110AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651856.10.0PREDICTED: homeobox protein knotted-1-like 8
SwissprotQ10ED21e-144KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLJ3LT910.0J3LT91_ORYBR; Uncharacterized protein
STRINGOB03G42670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-78KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]