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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G40700.1 | ||||||||
Common Name | LOC107303722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 173aa MW: 19704.3 Da PI: 9.7865 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.6 | 9.5e-08 | 2 | 44 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rEr+RR+++ ++++ L ++ ++ K +K +i++ A YI++L OB03G40700.1 2 MRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 44 79*********************8.....6999999*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.096 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-5 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-11 | 2 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.32E-5 | 2 | 45 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-8 | 2 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-5 | 2 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MMRERQRREK LSQSYADLYA MVSSRSKGDK NSIVQSAAIY IHELKGARDQ LQRRNEELKA 60 KIMGHDEQQQ CVKVQFEVDE PSSSIDSMIG ALRRLKSMNV KTRKIRSSLS GRSSLSGNRL 120 WTEMNVETTI AACEVEKAVE EALKEVERKQ PDSDAPFPGS RGWTQTSHVQ NVF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G40700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071734 | 1e-138 | AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence. | |||
GenBank | HQ858871 | 1e-138 | HQ858871.1 Oryza sativa Japonica Group isolate UT1684 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689712.1 | 1e-126 | PREDICTED: transcription factor BHLH148 | ||||
Swissprot | Q75KV9 | 1e-108 | BH148_ORYSJ; Transcription factor BHLH148 | ||||
TrEMBL | J3LSP4 | 1e-125 | J3LSP4_ORYBR; Uncharacterized protein | ||||
STRING | OB03G40700.1 | 1e-126 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5940 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 107303722 |
Publications ? help Back to Top | |||
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