PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G39780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 241aa    MW: 27412.9 Da    PI: 6.2467
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G39780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-091431772155
                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   + +yps+ e+  LA+++gL+++q+ +WF N+R ++
  OB03G39780.1 143 RWPYPSEMEKIALAESTGLEQKQINNWFINQRKRH 177
                   669*****************************885 PP
2ELK33.87.7e-1297118122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK++Ll+KYsgyLgsL++E+s
  OB03G39780.1  97 ELKRHLLKKYSGYLGSLRKELS 118
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.2E-7649IPR005541KNOX2
PfamPF037915.0E-101347IPR005541KNOX2
PfamPF037894.2E-997118IPR005539ELK domain
SMARTSM011881.9E-697118IPR005539ELK domain
PROSITE profilePS5121311.27897117IPR005539ELK domain
PROSITE profilePS5007112.892117180IPR001356Homeobox domain
SuperFamilySSF466894.15E-19118194IPR009057Homeodomain-like
SMARTSM003891.5E-12119184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-27122182IPR009057Homeodomain-like
CDDcd000867.99E-12129181No hitNo description
PfamPF059202.5E-16137176IPR008422Homeobox KN domain
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVCILKRSSL TVEEYCKLLV DCKEELSRPL QEAEEFIRTV ESELNTINSG PPLATLISED  60
KTGLGSSDDE QEDGSGMEVE AAEDEAVGVD PRSDDRELKR HLLKKYSGYL GSLRKELSKK  120
KKKGKLPKEA RQKLLTWWEL HYRWPYPSEM EKIALAESTG LEQKQINNWF INQRKRHWKP  180
SEEMQFAVME AYHHYHHYQQ NANSDAAAAT AALYVDARLI GAAAPAAAVY ARPDHGVWHA  240
S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G39780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0716640.0AB071664.1 Oryza sativa Indica Group mRNA for transcription factor OSH3, complete cds, cultivar:IR24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651769.11e-170PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ948L51e-103KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLJ3LSF21e-178J3LSF2_ORYBR; Uncharacterized protein
STRINGOB03G39780.11e-179(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-63KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]