PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G36580.1
Common NameLOC102714636
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 331aa    MW: 36184.2 Da    PI: 5.8508
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G36580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-092382712255
                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  OB03G36580.1 238 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 271
                   59*****************************885 PP
2ELK35.81.8e-12191212122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK +Ll+KYsgyL+sL+ E+s
  OB03G36580.1 191 ELKSHLLNKYSGYLSSLWRELS 212
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-225599IPR005540KNOX1
PfamPF037907.0E-225697IPR005540KNOX1
SMARTSM012566.6E-25104155IPR005541KNOX2
PfamPF037911.2E-20108154IPR005541KNOX2
PfamPF037892.0E-9191212IPR005539ELK domain
PROSITE profilePS5121310.353191211IPR005539ELK domain
SMARTSM011884.0E-7191212IPR005539ELK domain
PROSITE profilePS5007112.455211274IPR001356Homeobox domain
SuperFamilySSF466891.5E-18212285IPR009057Homeodomain-like
SMARTSM003899.5E-12213278IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-25216275IPR009057Homeodomain-like
CDDcd000863.32E-11220274No hitNo description
PfamPF059207.2E-16231270IPR008422Homeobox KN domain
PROSITE patternPS000270249272IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEQLDPLLAP DSKAATSSLC LTLDNPASTS ASPAPAASPA ALEPSRQSFH ERETDAIKAK  60
IMSHPLYPAL LRAFIDCQKV GAPPEVVGRL SALAGELDSR SEDRHQGPSS DPELNEFMET  120
YIDVLVSYRQ ELTRPIQEAD QFFRNMEAQI DSFTLDDNGS EGANSSEDEQ EAAGDMAGLP  180
EITSPCAEDK ELKSHLLNKY SGYLSSLWRE LSKKKKKGKL PRDARQKLLH WWQLHYRWPY  240
PSELEKAALA ESTGLDAKQI NNWFINQRKR HWKPTPPAAM EYRSSLQPGA SYGGGAGGGA  300
STSSSSAAVR GMEGQHQHFT GGGSAYPRGG P
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G36580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950031e-151HQ695003.1 Oryza sativa fused compound leaf 1 (FCL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651678.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X2
SwissprotQ75LX70.0KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLJ3LRI20.0J3LRI2_ORYBR; Uncharacterized protein
STRINGOB03G36580.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-82KNOTTED-like from Arabidopsis thaliana