PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G36500.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 299aa    MW: 32710.8 Da    PI: 8.1752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G36500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-1386157555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC........................TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkas.....................kapskKlsKaeiLekAveYIksLq 55 
                   h + Er+RR++iN++f eL  ++P++                         s  ++Ka+iL  A  YI++Lq
  OB03G36500.1  86 HVITERKRREKINQRFIELSAVVPTLKkvvqnkshqfhtmkcfrfdplVSLSDQMDKATILSDAASYIRELQ 157
                   8899*********************878********************999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.32281156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1484166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1685161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-1086161No hitNo description
PfamPF000102.1E-1086157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1287162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDDSNLFLQW AVSTLQHQHP APAAVGESRG EAAAAATSFF SLQALCDAAE VVVPVQERTA  60
TALPSTGGSA RRSAAASSAA YAQLEHVITE RKRREKINQR FIELSAVVPT LKKVVQNKSH  120
QFHTMKCFRF DPLVSLSDQM DKATILSDAA SYIRELQGKL KAMEPEATGP PPLKGGPLRG  180
CHRAAVARQQ EAVPRRAGGG RHLPGAGAGD RGAAVLAEKE RDCEDPLQER EGDDREGARR  240
GRGAPPQNHQ RQCHAISGWY HDDHHHHCKG MLYVMILDIR DFENEFERAY SGTKIGLIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994ERKRRE
29095RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G36500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1163691e-48AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAC1467181e-48AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence.
GenBankAP0149591e-48AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-48CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LRH40.0J3LRH4_ORYBR; Uncharacterized protein
STRINGOB03G36500.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.14e-12ABA-inducible BHLH-type transcription factor