 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB03G36200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
Trihelix |
| Protein Properties |
Length: 275aa MW: 29842.4 Da PI: 7.8771 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB03G36200.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 59.8 | 7e-19 | 40 | 109 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
Wt e+++Liea++++++ r ++ + ++W++v +++++rg++rs++qC+++w+nl ++ykk+++ e +
OB03G36200.1 40 WTLPETMLLIEAKKRVHDGRRpAADQGLARWRWVEDYCWRRGCQRSQNQCNDRWDNLMRDYKKVRAYELS 109
*************99998888357899*************************************987765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MDAGGSVGAL LGQEEEGEAM NTMADAMVQV AAREYRRGNW TLPETMLLIE AKKRVHDGRR 60
PAADQGLARW RWVEDYCWRR GCQRSQNQCN DRWDNLMRDY KKVRAYELSG AGAGGGTESY 120
WVMGRGERKE RGLPANLLRE IYEAMDEVVE RRMSSGGGGA VFLTASSSGS GLADVPMAMQ 180
ASPLAQLLPR PLAETTNCSS GSPERKRRRP SQGKQPPSSS AAAASASGSL HAVPNGVSID 240
CLAPSAALLA WHHEEEEEAL AGRDAGGRVR QNRVN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC135792 | 1e-159 | AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence. |
| GenBank | AP014959 | 1e-159 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
