PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G35930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 154aa MW: 16935 Da PI: 10.1155 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 58.8 | 1.5e-18 | 65 | 120 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+lal+++e OB03G35930.1 65 KKKDIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQLALAQAE 120 45678999********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.249 | 9 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-16 | 67 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MSASSSRPQF VSVYVLHKND LSSATSTLLC FAGNSLFILQ HIWLGKFLLM AMLLGTISVS 60 VNGKKKKDIP VQHRGDAVSS LVYEANARVR DPIYGCVGAI SSLQQQVEAL QAQLALAQAE 120 MVRLRMSNDY ISRRLRPMLL LICLVLFLGL VANL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-17 | 46 | 123 | 39 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-17 | 46 | 123 | 39 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G35930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139174 | 1e-93 | AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-93 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-93 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690001.1 | 7e-36 | PREDICTED: LOB domain-containing protein 4-like, partial | ||||
Swissprot | Q8LBW3 | 3e-23 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | J3LRB7 | 1e-107 | J3LRB7_ORYBR; Uncharacterized protein | ||||
STRING | OB03G35930.1 | 1e-108 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-16 | LOB domain-containing protein 4 |
Publications ? help Back to Top | |||
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