PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34880.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 162aa    MW: 17353.3 Da    PI: 8.4428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.5e-083312255
                  HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   L+el+P++      K +Ka++L +A+eY+ksLq
  OB03G34880.1  3 ALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 31
                  69******8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-10138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-11243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-8335No hitNo description
PfamPF000103.1E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRALQELIPH CNKTDKASML DEAIEYLKSL QLQLQMMWMG SGMAPPVMFP GVHQYLPRMG  60
VGMGAAAAMP RMPFMAAPQP VVPTAPVNPI PPVYRGHMPA GAAVGLTEPY AHYLGVNHLQ  120
PPSQHYLQGV GYYPLEAKAR IVPTPNGSMP APSENVPNGG SG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605051e-106AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698353.17e-76transcription factor PIF1 isoform X2
TrEMBLJ3LR121e-112J3LR12_ORYBR; Uncharacterized protein
STRINGOB03G34880.11e-113(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.13e-23phytochrome interacting factor 3-like 6