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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G34470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 34930.4 Da PI: 6.9015 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.5 | 1.9e-51 | 5 | 165 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...................................kvkaeekewyfFs 62 lppGfrFhPtdeelv++yL++kv++ + + ++i++vd++k+ePwdLp+ k++ +ekewyfFs OB03G34470.1 5 LPPGFRFHPTDEELVTYYLTRKVSDFAFAT-RAIADVDLNKCEPWDLPNdkrplyatlytyknvkimnewirssnihmdgweagKASMGEKEWYFFS 100 79*************************999.89**************96689**********************99999998876667999****** PP NAM 63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 rd+ky+tg r+nrat+sgyWk+tgkdke+++ +g lvg+kktLvfy+grapkg kt+Wvmheyrl OB03G34470.1 101 MRDRKYPTGIRTNRATESGYWKTTGKDKEIFH-GGMLVGMKKTLVFYRGRAPKGAKTSWVMHEYRL 165 ********************************.*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-55 | 3 | 53 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.362 | 5 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 6 | 165 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-55 | 86 | 186 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEEGLPPGFR FHPTDEELVT YYLTRKVSDF AFATRAIADV DLNKCEPWDL PNDKRPLYAT 60 LYTYKNVKIM NEWIRSSNIH MDGWEAGKAS MGEKEWYFFS MRDRKYPTGI RTNRATESGY 120 WKTTGKDKEI FHGGMLVGMK KTLVFYRGRA PKGAKTSWVM HEYRLQTKFP YKPSKDEWVV 180 CRVFKKCQLL KIRPPMAHDD DGAEHHLVDD GSPCGGGGGH AGGSSSLGDL GELDVSSILG 240 GFASSANAAP LCHGGGGGGE SFGAHRLDVG AQARDVGVSL ANVGADALFG GALSAKVDME 300 CGEQAAHLDM DDATWRAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 5 | 186 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 5 | 186 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 5 | 186 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 5 | 186 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-51 | 5 | 186 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 5 | 186 | 17 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G34470.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092780 | 1e-119 | AC092780.6 Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-119 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-119 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689976.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | O04017 | 1e-71 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | J3LQX1 | 0.0 | J3LQX1_ORYBR; Uncharacterized protein | ||||
STRING | OB03G34470.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 4e-85 | NAC domain containing protein 58 |