PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34080.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 312aa    MW: 34382.6 Da    PI: 7.8997
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.7e-3871091100
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard...PvyGavgvilklqqqleqlkael 94 
                   +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeAear+r    PvyG+v+ i+ lq +++q+++++
  OB03G34080.1   7 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVTKLLNDLQPDQREDAVNSLAYEAEARLRGappPVYGCVAYISILQLRIKQVREQI 103
                   7*******************************************************************984444*********************** PP

        DUF260  95 allkee 100
                   +++++e
  OB03G34080.1 104 VEARKE 109
                   999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0086110IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-387107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DQPAKFANVH KVFGASNVTK LLNDLQPDQR  60
EDAVNSLAYE AEARLRGAPP PVYGCVAYIS ILQLRIKQVR EQIVEARKEL AAYIGPTAFA  120
PLVAAAPHPH QHYLPSAAAE AHGQYHLPGT MGVPIAGGSF THQVQHQMAG LQVQHPQHHH  180
HLLHHQQQMV NAQHMASAVE VARDPNMERI LRARQVAYAQ ANATTVAVEA PSGSLNADAF  240
HGGSFLLHHQ QQSSAQTEPA MALPFRVEPP PPQPSSGHSH DEVSQQQHHH HPHHHRHHHH  300
TDGTDERFFR LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4431137114LOB family transfactor Ramosa2.1
5ly0_B2e-4431137114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369721e-158AC136972.3 Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence.
GenBankAP0149591e-158AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690459.10.0PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 36-like
TrEMBLJ3LQT20.0J3LQT2_ORYBR; Uncharacterized protein
STRINGOB03G34080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.16e-59ASYMMETRIC LEAVES 2-like 1