PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G29280.1

Common Name

LOC102711330

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 314aa MW: 34401.3 Da PI: 4.9948

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G29280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.1	0.00018	263	302	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + ++L +A+ Y+k+L OB03G29280.1 263 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 302 9******************97...333..3458999999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.89	253	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-6	263	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-7	263	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.48E-4	263	307	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGEKVNPWCY WPNPPWTESS ANNLHPSDVS HENTNSMAFP TYLNSDGYIY PGVAASMPSF 60 AASVAERPAS LSSRFVTTLA PSVGMSTADN LRKRPLVFFH NENNPFTVVP LLRKGVLDAV 120 PELQGSNETN VTDVGAQNTG CMHENTEEID AFLCSDSDEG FLKVQELNKI WKYPMQNDTM 180 SVESVASAGT SQPAKKRRLS SGADRSVVDT ASSARPDHSV DQKHLSHDDD AHSCCIGEVE 240 SEHQFSLREG EEAEGDDSPD DRKRRRERIQ ETVAALRKIV PGGIAKDATA VLDEAICYLK 300 YLKLKVKTLG AVSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	265	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G29280.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC099323	0.0	AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBank	AK065674	0.0	AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650159.1	0.0	PREDICTED: transcription factor bHLH144-like
Refseq	XP_015690943.1	0.0	PREDICTED: transcription factor bHLH144-like
TrEMBL	J3LPF2	0.0	J3LPF2_ORYBR; Uncharacterized protein
STRING	OB03G29280.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10031	18	20

Link Out ? help Back to Top
Entrez Gene	102711330