PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G27910.1
Common NameLOC102721059
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 294aa    MW: 32505.6 Da    PI: 8.3376
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G27910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95e-36281202103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sw e+g +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll+ki+
  OB03G27910.1  28 FLSKTYELVDDPSSDHVVSWGEDGATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLSKIH 115
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
  OB03G27910.1 116 RRKSS 120
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.8E-3524117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-5924117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.9E-3825117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAFLVERCGG GEMVVSSDGR GAAAPAPFLS KTYELVDDPS SDHVVSWGED GATFVVWRPP  60
EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN EFFRKGAKHL LSKIHRRKSS  120
SSCSHPPPLL PLPMHQHYPL SLFSPPPPTT TTTTRSPPVG AAAAAYHFQE EYCSPSSDVV  180
VSGGDLLAAR SGDNRQLRRR NSLLLSELAH MRKLYDDIIY FLQNHVEPAA PSTPKPPPAP  240
SCRLVELGPS PSPTQRSGDD DAAVRLFGVR LDDHGKKRRA QLVEEGDVAS REAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-221911717129Heat shock factor protein 1
5d5v_B1e-221911717129Heat shock factor protein 1
5d5v_D1e-221911717129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G27910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1257841e-122AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence.
GenBankAP0149591e-122AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-122CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690975.10.0PREDICTED: heat stress transcription factor B-4d-like isoform X2
RefseqXP_015690976.10.0PREDICTED: heat stress transcription factor B-4d-like isoform X2
SwissprotQ10KX81e-128HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLJ3LP150.0J3LP15_ORYBR; Uncharacterized protein
STRINGOB03G27910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-56heat shock transcription factor B4