PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G21650.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 348aa    MW: 37344.4 Da    PI: 6.7848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G21650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2608.3e-80229984373
          GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                   ++++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sRp   ++p+lRiT+++++  g +++++e g+rL+ fA ++g pf+f
  OB03G21650.1   2 LQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDIAEGIQWASLMQAMTSRPdgVPAPHLRITAISRSGGGGARAVQEAGRRLSAFAVSIGQPFSF 98 
                   799**************************************************666789*********7777************************* PP

          GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse.......sFlerflealeyysal 267
                        ++ e +++ + r+ +gE+l+ n+vl+                 ++L+ +  l +++v+vve+e + ++         F++rf+e l+ ysa+
  OB03G21650.1  99 GQCRLDSDERFRPTTVRMVKGETLVANCVLHQAAATTTIRRP-TgSVASFLSGMAALGARLVTVVEEEGEAEKDgdsdaagGFVRRFMEELHRYSAV 194
                   **9999***********************9655554333333.247889*******************88755456788889*************** PP

          GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWk 363
                    dslea++p++s+ r  vEr++lg++i  +v+ + +  +   e    W e+++  GF +vpls ++ +qa+lll  ++ dgy+vee   + +vlgWk
  OB03G21650.1 195 WDSLEAGFPTQSRVRGLVERVILGPNIAGAVSRAYRG-VDGGEGRCGWGEWMRGNGFAAVPLSCFNHSQARLLLGLFN-DGYTVEETgPNKIVLGWK 289
                   ***********************************99.999999**********************************.******99457788**** PP

          GRAS 364 drpLvsvSaW 373
                    r+L+s+S+W
  OB03G21650.1 290 ARRLMSASVW 299
                   ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.4461280IPR005202Transcription factor GRAS
PfamPF035142.9E-772299IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLQDMSPYMK FGHFTANQAI LEAVAGDRRV HIVDYDIAEG IQWASLMQAM TSRPDGVPAP  60
HLRITAISRS GGGGARAVQE AGRRLSAFAV SIGQPFSFGQ CRLDSDERFR PTTVRMVKGE  120
TLVANCVLHQ AAATTTIRRP TGSVASFLSG MAALGARLVT VVEEEGEAEK DGDSDAAGGF  180
VRRFMEELHR YSAVWDSLEA GFPTQSRVRG LVERVILGPN IAGAVSRAYR GVDGGEGRCG  240
WGEWMRGNGF AAVPLSCFNH SQARLLLGLF NDGYTVEETG PNKIVLGWKA RRLMSASVWA  300
PPPLPVPSSP PEAVCQPVAG IAPATGGFAR TEFDYIDSFL VEPAYALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-475301104379Protein SCARECROW
5b3h_D9e-475301104379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G21650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352060.0AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689839.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-117NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLJ3LM890.0J3LM89_ORYBR; Uncharacterized protein
STRINGOB03G21650.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-90GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]