PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G19600.1

Common Name

LOC102711960

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 307aa MW: 33965.1 Da PI: 6.0492

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G19600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.6e-12	136	184	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq OB03G19600.1 136 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 184 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.19E-11	131	188	No hit	No description
SuperFamily	SSF47459	1.01E-17	131	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	133	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-18	133	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-9	136	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	139	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MYSPPRTAAV NNRGHCFEVG ANQLDLVMDF DEPILFPVHN ASLQEGIQFY NPISVSMFQH 60 SPDSQLSRNM SIDKCLKGSK RKGSGEGSSS LHSQEETGEM PEREISMEHA GEKAGDADAS 120 REDYVHVRAK RGQATNSHSL AERFRREKIN ERMKLLQDLV PGCNKITGKA MMLDEIINYV 180 QSLQRQVEFL SMKLSAISPE LSSGLDLQDI LCARDARSAF LGCSQRLSNA HPSLYRGAQQ 240 GFSRPGLYGV TVNNPADVHM ARTTQLATFP QRGLIWDEEL GNIAPADFAS DAVRTSSLEN 300 SDSMKVE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G19600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242003	0.0	AK242003.1 Oryza sativa Japonica Group cDNA, clone: J075103H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015690528.1	0.0	PREDICTED: transcription factor bHLH62-like isoform X2
Swissprot	Q9SRT2	1e-43	BH062_ARATH; Transcription factor bHLH62
TrEMBL	J3LLN4	0.0	J3LLN4_ORYBR; Uncharacterized protein
STRING	OB03G19600.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4536	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	8e-46	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	102711960

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]