PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G19470.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 368aa    MW: 40313.1 Da    PI: 6.0927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G19470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15.1e-11187234355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  OB03G19470.1 187 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 234
                   5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.265184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-9187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-10189238No hitNo description
SuperFamilySSF474599.03E-15189248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.665299368IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNTLSNKVSL SSNLNLQTGL AEHRVLDDIY RNIHTFSDGR AKPVAHGAGK YIHFLREPEE  60
LTYMYHQEEH SRMQEQFVGG PLLEPPVHFD QFNTTPMASS NPFHPSQGAS FPSFGGSELP  120
SLTFGAAATK NEPRMQPSPS SSNVLSFAGQ AQGATLDFSG RTWQQDDGVS VFQQPPERRS  180
RAPVNAQEHV IAERKRREKL QQQFVALATI VPGLKKTDKI SLLGSTIDYV KQLEEKVKTL  240
EEQHGTRRTA EPTTAFESKC RITADDDDDD DAGPSGSASG ADDAYSPTVE ANIHGSTVLL  300
KICCKERRGL LVMVLSELEN HGLSIINTSV VPFTDSCLNI TITAKVEEGF STAVELVKNL  360
TVAVKGFK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERKRRE
2193198RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G19470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690639.10.0PREDICTED: transcription factor bHLH19-like isoform X2
TrEMBLJ3LLM10.0J3LLM1_ORYBR; Uncharacterized protein
STRINGOB03G19470.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-36bHLH family protein