PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G17860.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 324aa    MW: 35338.1 Da    PI: 5.8747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G17860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-112472871055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OB03G17860.1 247 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 287
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-14240300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12242296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-12246291No hitNo description
PfamPF000104.5E-8247287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMESSEASWH SFDPSVAMED SEAMAQLLGV QYFGNEQEQQ LRQPPATYWP GHEAADQYYG  60
SAPYCYMQQQ QHYGCYDGGA MVAGDFFVPE EQLADPSFMV DLNLEFEDQH GDAGSSGAAA  120
AGGKMTPACK RKAEDHRDES ATTDNVSRKK ARSTAAAVQK KGKSAQCKKA QKGACSRSSH  180
QQERDGGGDG NVQSSSNYLS DDDSLEMTSC SNVSSASKKP SSTAAQHGAK ARAGRGAATD  240
PQSLYARKRR ERINERLKIL QNLIPNGTKV DISTMLEEAV HYVKFLQLQI KLLSSDDMWM  300
FAPIAYNGVN VGLDLKISPP PQQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G17860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235681e-129AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322141e-129AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149591e-129AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651146.10.0PREDICTED: transcription factor bHLH85
SwissprotQ84WK01e-51BH085_ARATH; Transcription factor bHLH85
TrEMBLJ3LL600.0J3LL60_ORYBR; Uncharacterized protein
STRINGOB03G17860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]