PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G17420.1 | ||||||||
Common Name | LOC102704873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 25879.1 Da PI: 7.5679 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.6e-19 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k OB03G17420.1 60 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 113 56689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 113.7 | 1.1e-36 | 60 | 150 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+e+l+ OB03G17420.1 60 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLA 150 9**************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.601 | 55 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.39E-16 | 57 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-16 | 58 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.94E-16 | 60 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-17 | 60 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.7E-16 | 60 | 113 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.2E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.2E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MTREGEEKLL FPSFAFPECF PEAVTSGGEQ KKARQRRRRK VKPEAFAAAT GESGVDEQAK 60 KRRLSDEQAR FLEMSFKKER KLETPRKVQL AAELGLDAKQ VAVWFQNRRA RHKSKLMEEE 120 FAKLRSAHDA VVLQNCHLET ELLKLKERLA DVEEEKAKLA AAAAATGGGS AGGGGGSSPS 180 SSSFSTVTYH PALVGQFGVE AAAEEADLYM SEYAYNNYML ELAAAGYGGG VYDQFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G17420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073446 | 0.0 | AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649569.1 | 1e-171 | PREDICTED: homeobox-leucine zipper protein HOX12 | ||||
Swissprot | Q10QF2 | 1e-119 | HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12 | ||||
TrEMBL | J3LL16 | 1e-170 | J3LL16_ORYBR; Uncharacterized protein | ||||
STRING | OB03G17420.1 | 1e-170 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-31 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Entrez Gene | 102704873 |
Publications ? help Back to Top | |||
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