PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 33810 Da PI: 4.6519

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G16630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	68	120	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++++ ++++++A+ +gL+ rqV vWFqNrRa++k OB03G16630.1 68 KRRLALEQVRALERSFETDNKLDPDRKARIARDIGLQPRQVAVWFQNRRARWK 120 4467789*********************************************9 PP
2	HD-ZIP_I/II	127.1	7.7e-41	66	158	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE+sFe+++kL+p+rK+++ar++glqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++e OB03G16630.1 66 EKKRRLALEQVRALERSFETDNKLDPDRKARIARDIGLQPRQVAVWFQNRRARWKTKQLERDFAALRSRHDALRADCDALRRDKDALAAEIRE 158 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.41E-19	54	124	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-19	65	126	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.342	66	122	IPR001356	Homeobox domain
CDD	cd00086	4.77E-17	67	123	No hit	No description
Pfam	PF00046	7.9E-16	68	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.7E-20	74	121	IPR009057	Homeodomain-like
PRINTS	PR00031	6.8E-5	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.8E-5	102	118	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-15	122	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MKRPASSRKS KKPGEKLAFA EEDSLVAATM EQQDEADLED VDDADDDEDM AGGHAAPSSS 60 SCGLGEKKRR LALEQVRALE RSFETDNKLD PDRKARIARD IGLQPRQVAV WFQNRRARWK 120 TKQLERDFAA LRSRHDALRA DCDALRRDKD ALAAEIRELR EKLSKPADTK AASVKVEAGN 180 DAATGAAATT ACKDGSSDDS DSSVVFNEEP SPYSGAAFEQ HPQQQQPGFI GFAASFLDTP 240 AATLGCSSLP ALESKWHGSY SYDSYKGGGY AFTEEWLAAS GEVGNDAASF FSDEHVSNLN 300 FGWCASGNEG W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G16630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101522	0.0	AK101522.1 Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence.
GenBank	AK101601	0.0	AK101601.1 Oryza sativa Japonica Group cDNA clone:J033051J21, full insert sequence.
GenBank	AK105644	0.0	AK105644.1 Oryza sativa Japonica Group cDNA clone:001-200-F05, full insert sequence.
GenBank	CT831039	0.0	CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649529.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX13-like
Swissprot	Q10QP3	1e-142	HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBL	J3LKT7	0.0	J3LKT7_ORYBR; Uncharacterized protein
STRING	OB03G16630.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	7e-33	homeobox protein 5

Link Out ? help Back to Top
Entrez Gene	102717599

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]