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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G16290.1 | ||||||||
Common Name | LOC102714354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 26269.1 Da PI: 10.0027 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54 | 3e-17 | 135 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k +++s+v + +l lp++f+e++ + +++ +tl de+ ++++ ++ ++++ l++GW +F+ ++gL +gD vF+l++ ++f +v+++ OB03G16290.1 135 FVKPMLHSHVVRGFWLGLPRHFCETYL-P-KRDAIVTLVDEKDEEFDTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLIKPTTF--KVHII 223 89************************4.3.36679***************..566555..9***********************986777..99999 PP -S CS B3 98 rk 99 r+ OB03G16290.1 224 RA 225 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-20 | 126 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-24 | 128 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.06E-26 | 133 | 224 | No hit | No description |
Pfam | PF02362 | 1.1E-15 | 135 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.829 | 135 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-19 | 135 | 226 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAIDKGMSPY EAARERTVEE NKRKMEALNL RHLSAALALA PKTPSPMKQK RRRIVEAAAV 60 APSPPRRSRR LANLPEVKYA EGASNGSERM KRSPRKPIDS IYLATRGSIS MEARLEAARK 120 AEELESQLDP EFPSFVKPML HSHVVRGFWL GLPRHFCETY LPKRDAIVTL VDEKDEEFDT 180 NYLAYKNGLS GGWAGFALDH GLLDGDATVF QLIKPTTFKV HIIRATVGDG NEATK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 53 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G16290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122017 | 0.0 | AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649518.1 | 1e-174 | PREDICTED: B3 domain-containing protein Os03g0184500 isoform X1 | ||||
Swissprot | Q10QS9 | 1e-161 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | J3LKQ3 | 1e-172 | J3LKQ3_ORYBR; Uncharacterized protein | ||||
STRING | OB03G16290.1 | 1e-173 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-48 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102714354 |
Publications ? help Back to Top | |||
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