PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G15380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 256aa MW: 28660.9 Da PI: 7.3601 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 125 | 178 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k OB03G15380.1 125 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 178 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130 | 9.7e-42 | 124 | 215 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+++en++L +++++L++e+ OB03G15380.1 124 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVRAENDALLSHNKKLQAEIV 215 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-20 | 116 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 120 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 123 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.12E-15 | 125 | 181 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 125 | 178 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-19 | 127 | 188 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.5E-6 | 151 | 160 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 155 | 178 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-6 | 160 | 176 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.2E-14 | 180 | 220 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MASNGMASSP SSFFPPNFLL HMAQQQAAPP PHDPQEQQHH HHHHHHHEQQ QQQHHHHLGV 60 GGPPPHPHNP FLPSPQCPSL QEFRGMAPML GKRPMYGDGG GGGDEVNGGG GEDELSDDGS 120 QAGEKKRRLN VEQVRTLEKN FELGNKLEPE RKMQLARALG LQPRQVAIWF QNRRARWKTK 180 QLEKDYDALK RQLDAVRAEN DALLSHNKKL QAEIVALKGR EAASELINLN KETEASCSNR 240 SENSSEINLD ISRTPP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 180 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G15380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689780.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX21-like | ||||
Swissprot | A2XD08 | 1e-126 | HOX21_ORYSI; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | J3LKG2 | 0.0 | J3LKG2_ORYBR; Uncharacterized protein | ||||
STRING | OB03G15380.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 4e-73 | HD-ZIP family protein |