PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G14910.1
Common NameLOC102718629
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 590aa    MW: 63138 Da    PI: 6.5959
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G14910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.3e-083543911954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  OB03G14910.1 354 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 391
                   554459******************************88 PP
2BELL114.94.1e-37216287172
          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+akpYt+lAl++iSrhFr+L+dai  q+
  OB03G14910.1 216 ERQDLQNKVSALMAMLDQVDRRYRHYHHQMQIVMSSFDAVAGAGAAKPYTALALQTISRHFRSLRDAIGAQV 287
                   799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.3E-48145285IPR006563POX domain
PfamPF075262.3E-48150283IPR006563POX domain
PROSITE profilePS5007112.001332395IPR001356Homeobox domain
SMARTSM003891.7E-9335399IPR001356Homeobox domain
CDDcd000863.28E-12335396No hitNo description
SuperFamilySSF466894.71E-17336402IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27338401IPR009057Homeodomain-like
PfamPF059204.6E-17352391IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MATFFSTSTN QRDLTGGVGS GGNEMSFQHY PPPSNPYSDS SAGGLIPLPA TIVSQSHVGH  60
GGDEAPAAFI GTREAPADSG EMGGLQTQLL MANGAAAQRH QGGLSLSLGT QVPLSLYQYR  120
PAGMAAASLL SPSGQSPTMA GRSAQNSIYV QNCRYLKAAR ELLDDVVNVR DAIKRKGDKS  180
QGKDSGDASD KSDDKAGSNA QKEQESNSAP ELSPSERQDL QNKVSALMAM LDQVDRRYRH  240
YHHQMQIVMS SFDAVAGAGA AKPYTALALQ TISRHFRSLR DAIGAQVQSV RRSLGEQDTS  300
AQGGGLSRLR YIDQQLRQQR AMQQFGMMQQ PQHAWRPQRG LPESAVSVLR AWLFEHFLHP  360
YPKDSEKLML ARQTGLSRGQ VSNWFINARV RLWKPMIEEM YKEEFGAEMD SNSSSENAGK  420
GKDEAISSED RDEFQSPPSA AAGKHGAAIQ LNPFKSEAAM GGMDGVGLSS CLDGAMGTYA  480
TSLNLNRHVP PGASAGGSTS LLHDALQAHH HAGGGDARFV SYGDMADLGG GYDGGSVSLT  540
LGLHHCNNAG PVPPEQQSLL YGSAGDFEYM NGPDDRQRFG PSQLLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17341398158Homeobox protein Meis1
4xrs_B3e-17341398158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G14910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680340.0AK068034.1 Oryza sativa Japonica Group cDNA clone:J013131E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649449.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_015691112.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLJ3LKB50.0J3LKB5_ORYBR; Uncharacterized protein
STRINGOB03G14910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-107BEL1-like homeodomain 6