PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OB03G13870.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 219aa MW: 23518.1 Da PI: 5.9445

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G13870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H OB03G13870.1 57 YECVFCKRGFTTAQALGGHMNIH 79 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.68E-6	54	83	No hit	No description
PROSITE profile	PS50157	10.471	57	84	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MEIGDDKRLM AEIAASSLEQ EVVAAAARRG DDDDVAAVTT TSTSPAAAAA STTRPYYECV 60 FCKRGFTTAQ ALGGHMNIHR RHRGRAKPPG RRDAPTGVTS AVLSRPDVEC YNQNRYLAYS 120 TPPPPPVRPA NPPTGSSFAT YYTGDTAPTV AGVDADCPSL TRELSLFGVA DNSCDHDLCL 180 RLGRVDDGSP HTPEGSPEWL SGELPELDLE LRLGRRPRH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G13870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC229755	1e-44	AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006651042.1	1e-148	PREDICTED: protein sister of odd and bowel-like
TrEMBL	J3LK11	1e-158	J3LK11_ORYBR; Uncharacterized protein
STRING	OB03G13870.1	1e-158	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8111	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-12	C2H2 family protein