PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G13860.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 623aa    MW: 66573.5 Da    PI: 6.2543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G13860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05512537123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   ++C+  +C ++F+++ +L +H ++ +
  OB03G13860.1 512 FECEidYCRMTFKTRADLSVHKKNtC 537
                   89*******************99866 PP
2zf-C2H212.60.00043536559223
                   EET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                   +C+   Cg++F+++ +L+rH++ H
  OB03G13860.1 536 TCTvkSCGRHFRSHKYLRRHQSIH 559
                   588889***************999 PP
3zf-C2H2120.00065595619123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   ykC+   C+k+++  s+++rH r++
  OB03G13860.1 595 YKCTtpGCSKVYKFVSDFTRHRRRC 619
                   99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035522512534IPR015880Zinc finger, C2H2-like
SMARTSM003550.42535559IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009535564IPR007087Zinc finger, C2H2
PROSITE patternPS000280537559IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-6540566IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-9551593No hitNo description
SMARTSM003550.04565589IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.468565594IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-9567588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280567589IPR007087Zinc finger, C2H2
SuperFamilySSF576678.77E-8584620No hitNo description
Gene3DG3DSA:3.30.160.605.8E-9589617IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.725595623IPR007087Zinc finger, C2H2
SMARTSM0035528595617IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MRVDTRFLFL LLLLAQVAPD AIKQKGHIAG RVPESELRSD ARVGLAERPP VPEDQGRDID  60
DGPPAKKPVT VLEATKGACG FSDAVARLEG SGKTVTEVAT EPAAIVGAPA ANGAVGGQEC  120
KEATCRADES AAELVATGVA SFLTGASAEL DVSKTASFAN LTVTKPRVSE RVSLVHEAAT  180
ETRASVSVPK ATKGASPDGE DAANSEITRG HSQESAAKME VTKEISLVSE AAADTELAER  240
VSVASEHFTE PGVKLSVPES PEVTERVPVA SGLHITGFAS LDKEGAVEPE VTGSGCIANE  300
ASEMKAKEGG CIFTRASAEP EDTGRASVCS GDDDIALDEP RPPDCVSVVA NVKVGNNAGE  360
AVASKLHPSR ANAESVDGST NSTSNGHVSS KSPTADEVAP PGGCVDTPSV SCLSDIVARS  420
IGKSGRTDII CYARRKGKRK LEMVEVKEEN VEMDDSAICD QYDDKLTSEQ TGPCESVTST  480
AVSVEIKIAD IKRELEDSST ASKGKRKKGQ RFECEIDYCR MTFKTRADLS VHKKNTCTVK  540
SCGRHFRSHK YLRRHQSIHN DDMPYKCPWE GCSMAFKWSW DRGEHFQVHT GKKPYKCTTP  600
GCSKVYKFVS DFTRHRRRCK PER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-4151261823129Lysine-specific demethylase REF6
6a58_A1e-4151261823129Lysine-specific demethylase REF6
6a59_A1e-4151261823129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433439RRKGKRK
2433440RRKGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G13860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297550.0AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651042.10.0PREDICTED: protein sister of odd and bowel-like
TrEMBLJ3LK100.0J3LK10_ORYBR; Uncharacterized protein
STRINGOB03G13860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-40relative of early flowering 6