PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G11000.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 342aa    MW: 36454.2 Da    PI: 4.9236
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G11000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.89.5e-2171126358
      trihelix   3 tkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenln 58 
                   ++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ 
  OB03G11000.1  71 PRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYTRSAKKCREKFENVD 126
                   69****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.96E-2368125No hitNo description
PfamPF138373.9E-1272126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQQQQQPGMP PFSAAGEAAS PISSRPPAAQ QQVEEQLGGA NGPGSGSSLD HDGLAGEDGD  60
RGGSSAGNRR PRQETLALLK IRSEMDAAFR EAALKGPLWE EVSRKLAEMG YTRSAKKCRE  120
KFENVDNANN GGSSGGMQTK ASNGTAAAGF PVVEGAGAGG NGVASDNKGS KQESVVKERG  180
GAAGGGQRQP QPLAMNHNYG NDRMADDMDS DSMDEDDDEF DDDDEDDDIG SGKMQMQYET  240
SSHFQRPQMQ QNQTVVVRPN GGGGGGGRMV QIERRMLGVL SQEWQPYKIS FDISGGSSRR  300
NGCNACTGGR LILKKYVKLT PFENILWSCK IKVAGYILRL LD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G11000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418004e-95AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LJ740.0J3LJ74_ORYBR; Uncharacterized protein
STRINGOB03G11000.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152231218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-25Trihelix family protein