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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB03G10360.1 |
| Common Name | LOC102705517 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 385aa MW: 41211.3 Da PI: 6.9232 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB03G10360.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 286.3 | 8.3e-88 | 30 | 384 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
v++L ++A+ ++gd +a+++Larl + + +p+ R a+yf+eAL+ l++ +++++++ ++++ + +l+a+k+fs++sP+l f+h+t+
OB03G10360.1 30 VDQLAQAAKLAEAGDVFAARQILARLTPRLPAAPTPLLRSAFYFKEALRVALSSPTTTTAASTNSTP---LDLLLKLTAYKAFSDLSPVLHFAHFTC 123
579***************************************************5555554444444...55999********************** PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
qa+l+++ + ++H++Dfdi+ G QW++L++ La+R + l++T+++s +s++ el+ +++ L++fA+elgvpf+f ++ + +dl + L
OB03G10360.1 124 VQAVLDELGAAPCIHVLDFDIGVGEQWASLMHDLAQRHTHTGvALKVTALVSTASHHPIELQLIHDSLSSFAAELGVPFRFAAF-DLNATDL-TGLL 218
**************************************66655****************************************7.4445555.5678 PP
GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
+v g+a+aV+l + + + + ++vL+lv++l +k+vv v++ +d+++++F++++l+al+ + l++sl+a +++s+ ++k+Er++++
OB03G10360.1 219 AVTAGDAIAVHLPVGSVHAP----A----VPSVLHLVRRLGAKLVVSVDRGCDRGDQPFAAHLLQALQSTVFLLESLDAM-GTDSDVAAKIERFWVQ 306
9999**********999999....4....456*********************************************998.99************** PP
GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++i ++v ++ a + Wr+ l +aGF pv++s++a++qa++ll+k +++g+r+e + gsl+l W++ +L svSaWr
OB03G10360.1 307 PKIDECVRAAAAG-----DRTPPWRATLASAGFVPVQVSSFAEAQAESLLKKLPVRGFRLERRAGSLFLHWQRGELASVSAWR 384
********99998.....7789************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MDPHMPSSPP FPQPFPKKPP TDDDTSSGGV DQLAQAAKLA EAGDVFAARQ ILARLTPRLP 60
AAPTPLLRSA FYFKEALRVA LSSPTTTTAA STNSTPLDLL LKLTAYKAFS DLSPVLHFAH 120
FTCVQAVLDE LGAAPCIHVL DFDIGVGEQW ASLMHDLAQR HTHTGVALKV TALVSTASHH 180
PIELQLIHDS LSSFAAELGV PFRFAAFDLN ATDLTGLLAV TAGDAIAVHL PVGSVHAPAV 240
PSVLHLVRRL GAKLVVSVDR GCDRGDQPFA AHLLQALQST VFLLESLDAM GTDSDVAAKI 300
ERFWVQPKID ECVRAAAAGD RTPPWRATLA SAGFVPVQVS SFAEAQAESL LKKLPVRGFR 360
LERRAGSLFL HWQRGELASV SAWRC
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213149 | 0.0 | AC213149.2 Oryza punctata clone OP__Ba0040A05, complete sequence. |
| GenBank | AC226081 | 0.0 | AC226081.2 Oryza minuta clone OM__Ba0187I19, complete sequence. |
