PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G43130.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 297aa    MW: 33127.6 Da    PI: 6.6808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G43130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.41.9e-1657103455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  OB02G43130.1  57 VHNLSEKRRRSRINEKMKALQSLIPNS-----SKTDKASMLDDAIEYLKQLQ 103
                   6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-2050114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-2051113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12753102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.68E-1656107No hitNo description
PfamPF000105.4E-1457103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1959108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMEDGGGQEH LDLIMRHHGS MGLDRCCESE EALGSSESEP TTRPARPRGK RSRAAEVHNL  60
SEKRRRSRIN EKMKALQSLI PNSSKTDKAS MLDDAIEYLK QLQLQVQMLS MRNGLYLPPV  120
NLSGAPENLP VPQMCAALDQ NSAKASHPSV VLQPANQISG AHLPFELPNQ HKPLFLPGVP  180
NTTTPEPRLL VESSRSNLQS LRFTESAEMI YPDEMMLKHR LTSANESTAV PGTDAKSGRQ  240
DTYMMNADRF DTYALSKDQL QNIMPENTEN VLDMPHLHRL QTGDAEVRVE GRIKVNL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G43130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333821e-103BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankBT0640561e-103BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
GenBankKJ7269881e-103KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689350.10.0PREDICTED: transcription factor PIL1-like
TrEMBLJ3LI460.0J3LI46_ORYBR; Uncharacterized protein
STRINGOB02G43130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-34bHLH family protein