PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G41640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 246aa    MW: 27462.9 Da    PI: 12.7094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G41640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.31.9e-082957133
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfsl 33
                  ++ykGVr++k +g+Wv+eIr p++   r r++l
  OB02G41640.1 29 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWL 57
                  59*****998.**********943...488887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-63057IPR016177DNA-binding domain
PROSITE profilePS5103211.4433057IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-113057IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMSSWSSSSS SPASAVETEG AGISDRGAKK YKGVRRRKWG KWVSEIRLPN SRDRIWLXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXRGAHGR GLPALAVAGV RHTRGGGAGR ARRRQHRLAP  180
GHGAPAAALL AARVGHQCLR LLAGSAAGAG VRRGHGRRGG QPRCKRFSLE LRHARLLLLP  240
ILINMH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13137KGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G41640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042575e-41AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149585e-41AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LHP72e-23J3LHP7_ORYBR; Uncharacterized protein
STRINGOB02G41640.13e-24(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-13ERF family protein