PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G41320.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 276aa    MW: 30186.6 Da    PI: 10.6896
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G41320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.93.5e-33102158158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   dep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+RgsgGrF
  OB02G41320.1 102 DEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKTRKPYLHESRHRHAMKRARGSGGRF 158
                   79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-38100161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.604101161IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.0E-29103158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-24104126IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-24135158IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLLPSSSSPS YGSKGDSFRK TVDGLMRSTL TFDNNNSVLP GQNIDYGQPM SCISYPYNDS  60
GSGVWASYKS RSVLYLKQFH PQIVGGGTST RVPLPSLEIA DDEPIYVNPK QYHGILRRRQ  120
LRAKLEAQNK LVKTRKPYLH ESRHRHAMKR ARGSGGRFLN TKQLEQQQQS HTTSTKATTD  180
SQNSSGSTHL RLGGGGAIGD QTSLPFKAVD SQDKIKRVAA SASTFTVTSA VHNDDAFFDR  240
HGHHLSSFSG HFGQSGAQGG VGSRHNGTQH RVSAMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-21102163263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142151RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G41320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185740.0AK318574.1 Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647991.20.0PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLJ3LHL50.0J3LHL5_ORYBR; Uncharacterized protein
STRINGOB02G41320.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.13e-37nuclear factor Y, subunit A5