PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G38020.1
Common NameLOC102705979
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 430aa    MW: 47521.8 Da    PI: 9.2342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G38020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-17182231255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r +h++ E+rRR +iN+++e+LrellP++    ++K +Ka+ L +++eYI+ Lq
  OB02G38020.1 182 RSKHSATEQRRRTKINDRLETLRELLPHS----DQKRDKASFLSEVIEYIRFLQ 231
                   889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-18178240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-22179243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.149180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-15182235No hitNo description
PfamPF000103.1E-15182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MQLFPGEETA HDFLSLRAGG SSSPSFQHRR EAQHSSQGYG MEMHRSLKPL EQAKQRSRSS  60
GNTAAGSAVD GASPAGSDSE EHVLPGGIGT FSIRQASGTP SREEAGSHGA VRNAFAPVLH  120
GSRMENAHET GGSGSRAHRA PSTMWQDSGT DQRSIGKTPY EATRAEGRSS ASSADQGPST  180
PRSKHSATEQ RRRTKINDRL ETLRELLPHS DQKRDKASFL SEVIEYIRFL QEKVQKYEAA  240
DPERNHEDSK SMPWAKVYYR SCWRNKQNIS QVQGGDLSSS TQDMNNEQYS PKHISAAHPD  300
LFNTSTPASS SHMATGTPKN WENNNTSSNQ PWLSMSTTRQ ESESGNRMLN KHERQTLQDE  360
NHSISSAYSQ GLFNRLTEAL KKSGLDPSQA NISVEINMSK RARENTSDNS KVNEAEELVH  420
ITKRPRCNKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G38020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647828.20.0PREDICTED: transcription factor BIM2-like isoform X2
TrEMBLJ3LGN50.0J3LGN5_ORYBR; Uncharacterized protein
STRINGOB02G38020.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.11e-37bHLH family protein