PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G37950.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 174aa MW: 19053.6 Da PI: 8.1774

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G37950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	131.7	2.3e-41	29	120	5	96
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + +lP+an++r+mkkvlP++aki+ ak+++++c++ef++fv++eas+k+++e+r+ti+++d+l ++++lGf++y+ep+++y++ yre+e+ OB02G37950.1 29 NTELPMANLIRLMKKVLPGKAKIGGTAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTIAPEDYLSSFGNLGFDRYIEPMQTYINGYREFERS 120 789**************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-27	26	122	IPR009072	Histone-fold
Pfam	PF00808	2.7E-13	30	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	8.57E-25	31	150	IPR009072	Histone-fold
PRINTS	PR00615	8.3E-7	59	77	No hit	No description
PRINTS	PR00615	8.3E-7	78	96	No hit	No description
PRINTS	PR00615	8.3E-7	97	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MGGNKKRGGT NMEAKKTVVG LDTGCGVTNT ELPMANLIRL MKKVLPGKAK IGGTAKGLTH 60 DCAVEFVGFV GDEASEKAKA EHRRTIAPED YLSSFGNLGF DRYIEPMQTY INGYREFERS 120 GGNRRVTSPM TPTSMMPEGP TFTNTELQFL RSVIPLSDDE SNGYDYGYGY GKNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-24	32	116	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269\|PubMed:11971906}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G37950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649006.1	1e-118	PREDICTED: nuclear transcription factor Y subunit B-1-like
Swissprot	Q6Z348	5e-79	NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBL	J3LGM8	1e-125	J3LGM8_ORYBR; Uncharacterized protein
STRING	OB02G37950.1	1e-126	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	4e-26	nuclear factor Y, subunit B6