PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G36640.1
Common NameLOC102711227
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 362aa    MW: 38847 Da    PI: 7.3195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G36640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09168215455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  OB02G36640.1 168 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 215
                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.85E-10162219No hitNo description
SuperFamilySSF474591.01E-16162231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16164226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAQCGGGGDL SRHRKGHLET VESLCQGLLD DVMLDDDKCR AMFGYLQEWQ DLGSMCYGSL  60
GEPPLPQASN GSGGFRKRRP EACLDAKAES DSVCKRQRGK QQQQQPCHPD QVAVAGKGRL  120
ERARAGAKKK VEVASPKDSP ATSASTVTAG QKTDYIHVRA RRGQATDSHS LAERVRRERI  180
SERMRYLQEL VPGCNKVTGK AGMLDEIINY VQSLQKQVEF LSMKIAASNP VVNFNIVEDL  240
FGRQLSQAAC NPAALPAMTL PIEQGEPSCL QMGPLQQMQT SAGSSSFGLN MVVSNPYSPA  300
PGGQISASAA MSVPAGASVE PCINVNGAAG WDIGAHNLFS GFDAPFQSVQ SDCLLDNLKM  360
EM
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G36640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191830.0AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647763.10.0PREDICTED: transcription factor bHLH63-like
TrEMBLJ3LG970.0J3LG97_ORYBR; Uncharacterized protein
STRINGOB02G36640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-39cryptochrome-interacting basic-helix-loop-helix 1