PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G35110.1
Common NameLOC102711672
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 433aa    MW: 46458.7 Da    PI: 7.9547
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G35110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07110130425
                   ---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                   ++Cr+f++ G C+yG++C+F H
  OB02G35110.1 110 RPCRYFLA-GDCSYGEKCRFPH 130
                   79******.***********66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8262854IPR000571Zinc finger, CCCH-type
SMARTSM003560.572953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-5107131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5110130IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4110130IPR000571Zinc finger, CCCH-type
SMARTSM003202.0E-6137176IPR001680WD40 repeat
SuperFamilySSF509785.31E-47139425IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.9E-46139424IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004009.0E-6141176IPR001680WD40 repeat
PROSITE profilePS5008214.118144185IPR001680WD40 repeat
PROSITE profilePS5029421.674144393IPR017986WD40-repeat-containing domain
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
PRINTSPR003201.2E-7163177IPR020472G-protein beta WD-40 repeat
SMARTSM003203.5216253IPR001680WD40 repeat
SMARTSM003200.0019260297IPR001680WD40 repeat
PfamPF004000.015265297IPR001680WD40 repeat
PROSITE profilePS5008211.645267306IPR001680WD40 repeat
PRINTSPR003201.2E-7284298IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780284298IPR019775WD40 repeat, conserved site
SMARTSM003202.8E-4300337IPR001680WD40 repeat
PfamPF004000.012302336IPR001680WD40 repeat
PRINTSPR003201.2E-7324338IPR020472G-protein beta WD-40 repeat
SMARTSM0032018341384IPR001680WD40 repeat
SMARTSM0032011387424IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDIETDGRFG NKRVHNRLGP ANGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPEATTK  60
RTNHGAGAGG NVWRNPSSGG GGGRGGGGLN KWGRGPGGGD GGPRHKVPDR PCRYFLAGDC  120
SYGEKCRFPH TYCMSDSITL LTPLQGHEKV VTGIALPAGS DKLYSGSKDG TVRMWDCQTG  180
QCAGVINMGR EIGCMISEGP WLFVGIPDAV KVWNMQTQAE MNLTGPTGQV YALAVGNELL  240
FAGTQDGRIL AWRFSAATNG FEPAASLVGH QLAVVSLVVG AMRLYSGSMD KTIRVWDLAT  300
LQCIQTLSEH TGVVMSVLCW EQFLLSCSLD QTIKVWAATE SGSLEVTYTH KEEHGALALS  360
GMPDAQSKPV LLCSLNDNTV RLFDLPSFSD RGRIYSKQEI RAIQVGPGGL FFTGDGTGEL  420
KVWQWVIEGA QTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-231414236323Tako8
6g6n_A1e-231414236323Tako8
6g6n_B1e-231414236323Tako8
6g6n_C1e-231414236323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G35110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023240.0AK102324.1 Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647681.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLJ3LFU40.0J3LFU4_ORYBR; Uncharacterized protein
STRINGOB02G35110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]