PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G34860.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 299aa    MW: 32783.5 Da    PI: 9.7859
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G34860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.18.3e-282070252
       G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52
                  prlrWt eLH++Fv+a++ LGG++kAtPk il+lm+v gLt++hvkSHLQ 
  OB02G34860.1 20 PRLRWTAELHRSFVRAIDCLGGQHKATPKFILQLMDVRGLTISHVKSHLQL 70
                  9*************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-251671IPR009057Homeodomain-like
SuperFamilySSF466899.14E-141770IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-202070IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGSGGGRKGA ARQYNRSKEP RLRWTAELHR SFVRAIDCLG GQHKATPKFI LQLMDVRGLT  60
ISHVKSHLQL NQLYFYSFLM LPSDMQPQPH LKKHSFCSDE QSPKEFMLCP PIKRAKVGTE  120
GSGKHRCMQG SSDTRSAPPA GTRHFIDDCM QLREVSMDRR SAHDAAAAVR APAAASNLQA  180
LGFWVQGASE EPFMVHQISK PKAHQLNHMV RKLSCKENHE DRLFTVSSAA RDEPTKKCAS  240
PLSLAIGQKA ANAISSWPSE GSCVISPSPR SFSDCSGPPG CSFVGQRVNL ELSLSICGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-152169351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-152169351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-152169351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-152169351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G34860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041605e-63AP004160.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1197_E09.
GenBankAP0041885e-63AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11.
GenBankAP0149585e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126105e-63CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624520.11e-158uncharacterized protein LOC107276067
TrEMBLJ3LFR90.0J3LFR9_ORYBR; Uncharacterized protein
STRINGOB02G34860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-26G2-like family protein