PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G34130.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 692aa    MW: 72722 Da    PI: 6.5059
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G34130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.12.4e-883346913374
          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+yf eAL   la+      +  ++s ts+ +++ +laa+k fs++sP+l+f+++ta 
  OB02G34130.1 334 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYFREALLLALAD-----GHHGASSVTSPLDVALKLAAYKSFSDLSPVLQFANFTAT 425
                   7899*************************************************.....344444555556699************************ PP

          GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   +l++++
  OB02G34130.1 426 QALLDEIGGTatSCIHVIDFDLGVGGQWASFLQELAHRRgaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV---SLDAFN 519
                   *********98899************************965444499****************************************8...99**** PP

          GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   + eL  ++ +E++aV+l +          +l+     +L+lvk+l+Pk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a  + +s+ + k+E
  OB02G34130.1 520 PTELISSTgDEVVAVSLPVGCSARS---PPLPA----ILRLVKQLNPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GIDSDSACKIE 608
                   ***9888889********9666554...55555....*********************************************988.89********* PP

          GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   r+l+++++ + v  +++       +++ Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S+Wr
  OB02G34130.1 609 RFLIQPRVHDTVLGRHKG-----HKAMAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALMLYWQRGELVSISSWR 691
                   *************99988.....56999***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.402306671IPR005202Transcription factor GRAS
PfamPF035148.3E-86334691IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MRAALFGAER SGVADLAGIG GNKELFWPAG KGLVVEPRSV LDCTRSPSPR NSTSTLSSSQ  60
GGGGGGAGST GVAAVSESSX XXXXXXXXXX XXXGSGGCEL PPIPGTLDVG LVGGEGWDAM  120
LSNTAAAGQD QSFLNWIIGA AGDLEQPGPP LIDNAGFGIP AVDPLGFSLD HPLSGVASNL  180
SSSGAHTATG GGGKASLGFG LFPPEATSLE QPPHPMLFHE GIDTKPSLLG GQPPGLLNQY  240
HHQPPNPAAT FFMPLPSFPE HNHQSPLLQP PPKRHHAMPD DLYLARNQLP AAAQGLPFSP  300
LHASVPFQLQ RSPQPPRGAM KTTAAEAAQQ QLLDELAAAA KATEAGNSVG AREILARLNQ  360
QLPPLGKPFL RSASYFREAL LLALADGHHG ASSVTSPLDV ALKLAAYKSF SDLSPVLQFA  420
NFTATQALLD EIGGTATSCI HVIDFDLGVG GQWASFLQEL AHRRGAGGVT LPLLKLTAFV  480
STASHHPLEL HLTQDNLSQF AADLGIPFEF NAVSLDAFNP TELISSTGDE VVAVSLPVGC  540
SARSPPLPAI LRLVKQLNPK IVVAIDHGAD RADLSFSQHF LNCFQSCVFL LDSLDAAGID  600
SDSACKIERF LIQPRVHDTV LGRHKGHKAM AWRSVFAAAG FKPVPPSNLA EAQADCLLKR  660
VQVRGFHVEK RGAALMLYWQ RGELVSISSW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-263326914375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G34130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010350.0AK101035.1 Oryza sativa Japonica Group cDNA clone:J023150P14, full insert sequence.
GenBankAP0040370.0AP004037.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1001_D02.
GenBankAP0048830.0AP004883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0516F12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689452.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6
TrEMBLJ3LFJ60.0J3LFJ6_ORYBR; Uncharacterized protein
STRINGOB02G34130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-93GRAS family protein