PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G34120.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 605aa    MW: 63859.7 Da    PI: 5.9575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G34120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.64.5e-862476043374
          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   + L ++A+a ++g+   a+++Larl+++ sp g+p+ R a+y++eAL   la+  s+  ++  +s+ +   ++ +laa+k fs++sP+l+fs++ta 
  OB02G34120.1 247 DELAAAAKAAEAGNSVGAREILARLNQQLSPLGKPFLRSASYLKEALLLALAD--SQHGSSGVTSPLD---VALKLAAYKSFSDLSPVLQFSNFTAT 338
                   6799*************************************************..4444445555554...99************************ PP

          GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   +l++++
  OB02G34120.1 339 QALLDEIGGMaiSCIHVIDFDLGVGGQWASFLQELAHRRgaggVALPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV---SLDAFN 432
                   *********9999*************************966444499****************************************8...99**** PP

          GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   + eL  ++ +E++aV+l +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a  + +++ + k+E
  OB02G34120.1 433 PAELISSTdDEVVAVSLPVGCSARA---PP----LPAILHLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GIDADSACKIE 521
                   *99977767*********9777665...44....556*********************************************888.7899******* PP

          GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   r+l++++++++v  + +       ++ +Wr+ + + GFkp++ s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S+Wr
  OB02G34120.1 522 RFLIQPRLEDAVIGRRKV-----HKAISWRSVFAATGFKPIQPSNLAEAQADCLLKRVQVQGFHVEKRGAALTLYWQHGELVSISSWR 604
                   ***********9876665.....56899***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.045219584IPR005202Transcription factor GRAS
PfamPF035141.6E-83247604IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MCELPPIPGA LDVGLVGGEG WDAASLGNAA AGQDQSFLNW IIGAAGDLEQ PGPPLPVHHQ  60
PLINNAGAGF GIPAVDTLGF SLDHPLSGVA SDLSSSGAHT GIGGGKVSPG FGLLSPEATS  120
LEQPPPSMLF HEDIDTKPPL LGAPPPVLLN HYHLQPPNPA AAFFMPLPSF PEHNHQSPHL  180
QPPLKRHHAM SDDLYLVGNQ QPSAAGQGLA FSPLHAQVPF QLQPSPPPTR GAMKTTAAEA  240
AQQQVLDELA AAAKAAEAGN SVGAREILAR LNQQLSPLGK PFLRSASYLK EALLLALADS  300
QHGSSGVTSP LDVALKLAAY KSFSDLSPVL QFSNFTATQA LLDEIGGMAI SCIHVIDFDL  360
GVGGQWASFL QELAHRRGAG GVALPLLKLT AFVSTASHHP LELHLTQDNL SQFAADLGIP  420
FEFNAVSLDA FNPAELISST DDEVVAVSLP VGCSARAPPL PAILHLVKQL SPKIVVAIDH  480
GADRADLSFS QHFLNCFQSC VFLLDSLDAA GIDADSACKI ERFLIQPRLE DAVIGRRKVH  540
KAISWRSVFA ATGFKPIQPS NLAEAQADCL LKRVQVQGFH VEKRGAALTL YWQHGELVSI  600
SSWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-252456044375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G34120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688686.10.0PREDICTED: scarecrow-like protein 6
TrEMBLJ3LFJ50.0J3LFJ5_ORYBR; Uncharacterized protein
STRINGOB02G34120.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.19e-93GRAS family protein